Other ‘metadata’ attributes are generated during import (see table). ‘biogrid.EXPERIMENTAL_SYSTEM’, making a unique list of values where multiple rows with the same unique interactor pair have different values for the column.
During import Cytoscape attributes are created with names beginning ‘biogrid.’, for data in corresponding columns in the BioGRID file, e.g. When data is imported using BiogridPlugin2, a single Cytoscape interaction is created for each unique combination of interactors, regardless of any other attributes. To immediately undo an expansion, simply choose Edit>Delete Selected Nodes and Edges while the nodes are still selected.īiogrid tab and tab2 files contain a single row for each unique combination of interactors A and B (A → B and B → A are also on separate rows), experimental system (and Modification for tab2 files) and publication. Newly added nodes from expansion will be the only selected nodes after expansion (highlighted yellow) so that they can be conveniently repositioned together and/or have a layout applied. New nodes are laid out circularly around the selected node avoiding overlap with other nodes in the case of a new node which connects with more than one expanded node, the new node will be placed around one of the expanded nodes. If a filter-limited network has been loaded, further interactors can be pulled in by right-clicking on a node in a network and choosing Biogrid Operations>Expand or Expand All Selected, which imports all interactions for those nodes from the current BioGRID file, according to the attributes of the currently set filter, disregarding filtering by gene. Data can be imported by using Plugins>BioGRID Operations>Create network, which imports data from the current BioGRID tab or tab2 file according to the currently set filter.
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